Hi rosieeeee, great question! No, we can’t see individual atoms on normal microscopes because the smallest distance we can see using light is about a quarter of a millimeter. This is because we can’t see anything smaller than the wavelength of the light used. We can use electrons to look at smaller things, because they have a much smaller wavelength than visible light.
Electron microscopes are more complicated than normal microscopes because we can’t see electrons directly, so we have to fire them at a special screen which emits light when the electrons hit it.
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